GgaEX6044543 @ galGal3
Exon Skipping
Gene
ENSGALG00000009005 | E1BUE7_CHICK
Description
NA
Coordinates
chr8:19847494-19859874:-
Coord C1 exon
chr8:19859705-19859874
Coord A exon
chr8:19859464-19859577
Coord C2 exon
chr8:19847494-19847685
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACTTATTTTCTCCATGAAAGGAA
3' ss Score
5.88
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTGGCCCAGGAAGTGGTAAAGGAACACAGAGTTTGAAAATAGCAGAACGCTATGGATTTAACTACATATCAGTTGGTGAATTGTTAAGGAAGAAGATCCACAGCACAAGCAGCAATAGAAAATGGAGTCTAATTGCTAAAATAATTACTACTGGAGAACTAGCCCCCCAG
Seq A exon
GAAACAACCATAACTGAGATCAAACAGAGATTAATGCAGATCCCTGATGAAGAGGGCATAGTGATCGATGGATTTCCCAGAGACGTTGCCCAGGCGATCTCCTTTGAGGACCAA
Seq C2 exon
ATCTGTACCCCAGATTTGGTGGTGTTCTTGGCATGTTCCAATCAAAGGCTCAAAGAAAGGTTACTGAAGCGTGCTGAACAGCAAGGGAGACCTGATGATAACCTGAAAGCTACTCAAAGAAGACTAATGAATTTCAAGCAAAATGCTGTTCCCCTGGTTAAATATTTCCAGGAAAAAGGGCTAATCGTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009005-'6-6,'6-4,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.079 C2=0.250
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(35.4=100)
A:
PF0040617=ADK=FE(23.4=100)
C2:
PF0040617=ADK=PD(38.0=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCCAGGAAGTGGTAAAG
R:
GCTGTTCAGCACGCTTCAGTA
Band lengths:
252-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]