MmuEX6074783 @ mm10
Exon Skipping
Gene
ENSMUSG00000039058 | Ak5
Description
adenylate kinase 5 [Source:MGI Symbol;Acc:MGI:2677491]
Coordinates
chr3:152615858-152653744:-
Coord C1 exon
chr3:152653575-152653744
Coord A exon
chr3:152653375-152653488
Coord C2 exon
chr3:152615858-152616049
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTTCATCTTTGTATTAAAGGAG
3' ss Score
6.6
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGGTCCAGGAAGTGGAAAGGGTACTCAGAGTTTGAAAATTGCAGAGCGGTATGGATTCCAGTACATCTCAGTGGGAGAATTATTGAGGAAGAAAATCCACAGTGCCAGCAGCAACAGAAAATGGAGTCTGATCGCCAAGATAATCACCAATGGGGAGCTGGCCCCACAG
Seq A exon
GAGACAACAATTACGGAGATAAAACAAAAATTGATGCAAATACCCGATGAAGAAGGCATTGTGATTGATGGATTCCCAAGGGATGTTGCCCAGGCTCTGTCTTTTGAGGACCAG
Seq C2 exon
ATCTGCACCCCTGACCTGGTGGTGTTCCTGGCTTGTGCCAACCAGAGGCTCAAGGAGAGGTTACAGAAGCGTGCGGAGCAGCAGGGGCGGCCAGATGACAACCTGAAAGCAACCCAAAGGAGACTAGTGAACTTCAAGCAGAATGCCGCCCCACTAGTGAAGTACTTCCAAGAGAAGGGACTCATCGTGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039058-'4-8,'4-5,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.079 C2=0.312
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(35.4=100)
A:
PF0040617=ADK=FE(23.4=100)
C2:
PF0040617=ADK=PD(38.0=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAATCCACAGTGCCAGCA
R:
AGTACTTCACTAGTGGGGCGG
Band lengths:
246-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types