DreEX0012370 @ danRer10
Exon Skipping
Gene
ENSDARG00000017739 | ak5l
Description
adenylate kinase 5, like [Source:ZFIN;Acc:ZDB-GENE-050410-2]
Coordinates
chr5:63499735-63503485:-
Coord C1 exon
chr5:63503313-63503485
Coord A exon
chr5:63501123-63501236
Coord C2 exon
chr5:63499735-63499926
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTGGCATGGTTTCCTGTAGGAG
3' ss Score
7.07
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GTGGACCAGGCAGTGGGAAGGGCACTCAGACAGCTAAAATCGCACTGCGCTATGATTTCGAGCATGTGTCTGTTGGGGAGATTTTAAGGAATCAGTTGCTTCATCATGCGCCCAGTGACCGGAAATGGGAGCTGATTGCCCAAATCATTGCCAATGGAGAACTGGCACCTCAG
Seq A exon
GAGACGACTATTGAAGAGCTAAAACAACAGTTCATCAAGAAACAGGATGCTAAAGGATTCATTGTGGATGGTTTTCCTAGAGAGATCTCACAGGCGTTCACTTTTGAGGAGCAG
Seq C2 exon
ATTGGGTCTCCAGACTTGGTGATTTTGCTGGCCTGCTCCAATCAGCAGCTTCGGCAGCGTTTAGAGAAAAGAGCATCTCAGCAGGGCCGTCCTGACGACAATTCTCATGCTATTGAGAAGAGACTGGACACTTTCAAACACAATATCAATCTCATAGCCAAGTACTATCAGGAGAGAGGACTTATTGTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017739-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.053 C2=0.312
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(35.8=100)
A:
PF0040617=ADK=FE(23.3=100)
C2:
PF0040617=ADK=PD(37.7=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGGCACTCAGACAGCTA
R:
GCCCTGCTGAGATGCTCTTTT
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]