BtaEX6016998 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017411 | AK5
Description
Bos taurus adenylate kinase 5 (AK5), mRNA. [Source:RefSeq mRNA;Acc:NM_001083757]
Coordinates
chr3:67373616-67388888:-
Coord C1 exon
chr3:67388725-67388888
Coord A exon
chr3:67386014-67386130
Coord C2 exon
chr3:67373616-67373807
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCGCTCTCCCTCTGCTCCAGGGC
3' ss Score
9.46
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTGGCCCAGGCTCTGGCAAAGGCACACAATGTGGAAAGCTGGCGGAAAAATATGGATTTACACATCTCTCGACTGATGAGCTCCTGCAGAATGAGCTGTCATCGGAATCTGGAAGAAGCAAGTTGATCAGAGACATCATGGAACGTGGAGAGCTGGTGCCCTCA
Seq A exon
GGCATCATTCTGGAGCTCCTGAAGGAGGCCATGGTGGCCAGCCTCAGCAACACCAAGGGCTTCCTGATTGATGGCTATCCTCGGGAAGTGAAGCAAGGAGAAGAGTTTGGACGTAGG
Seq C2 exon
ATTGGAGACCCACACCTGGTGATCTGTATGGACTGCTCAGCAGACACCATGACCAACCGCCTTCTCCAGAGGAGCCGGAACAGCCCACAGGCAGATGACAACACCACCACCATCGCCAAGCGCCTTGAGACCTACTACCGGGCCTCCATCCCTGTGGTCGCCTACTATGAGACAAAAACACAGCTACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017411-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.026 C2=0.250
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(34.4=100)
A:
PF0040617=ADK=FE(24.2=100)
C2:
PF0040617=ADK=PD(38.2=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCCTGCAGAATGAGCTG
R:
TAGTAGGCGACCACAGGGATG
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]