RnoEX0008242 @ rn6
Exon Skipping
Gene
ENSRNOG00000046947 | Ak5
Description
adenylate kinase 5 [Source:RGD Symbol;Acc:1590818]
Coordinates
chr2:257678612-257693993:-
Coord C1 exon
chr2:257693830-257693993
Coord A exon
chr2:257690449-257690565
Coord C2 exon
chr2:257678612-257678803
Length
117 bp
Sequences
Splice sites
3' ss Seq
GACCACTCTCTCTGCTGTAGGGT
3' ss Score
9.14
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTGGCCCTGGCTCTGGCAAAGGCACCCAGTGTGAGAAGCTGGCAGAAAAATATGGGTTCACCCATCTCTCTACTGGTGAGCTGCTGCGCCAGGAGCTGACCTCGGAGTCCGAAAGAAGCAAACTGATCCGTGACATCATGGAGCGTGGAGATCTGGTGCCCTCG
Seq A exon
GGTGTCGTCCTGGAGCTGCTGAAGGAGGCCATGGTGGCCAGCCTGGGCAACACCAAGGGCTTCCTGATTGACGGCTACCCCCGGGAAGTGAAGCAAGGGGAAGAGTTTGGACGAAGG
Seq C2 exon
ATCGGAGAGCCACAACTGGTGATCTGCATGGACTGCTCAGCAGACACCATGACTAACCGCCTTCTGCAGAGAAGCCAGAGCAGCCAGCGTGGGGAGGACAGTGCCAAGAGCGTTGCCAAACGCCTGGAGGCTTACCACCGAGCGTCCATCCCTGTCATCGCCTACTACGAGACGAAAACACAGCTACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046947_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.026 C2=0.234
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(34.4=100)
A:
PF0040617=ADK=FE(24.2=100)
C2:
PF0040617=ADK=PD(38.2=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGCTGACCTCGGAGTC
R:
CGTAGTAGGCGATGACAGGGA
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]