GgaEX1007212 @ galGal4
Exon Skipping
Gene
ENSGALG00000009005 | AK5
Description
adenylate kinase 5 [Source:HGNC Symbol;Acc:HGNC:365]
Coordinates
chr8:17989694-18017787:-
Coord C1 exon
chr8:18017711-18017787
Coord A exon
chr8:17993003-17993119
Coord C2 exon
chr8:17989694-17989882
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTCTTTCTCATGCAGGGT
3' ss Score
11.5
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GGACAAATGAACTTGATTGCAGTCTGATTATGGATTCTGGAGATACTGCTTATACAGAATTCGACTTTGAAGACCAG
Seq A exon
GGTATTGTCCTAGAGCTACTGAAAGAAGCCATGATCACAAATTTAGGAGACACAAAAGGATTTCTGATTGATGGTTATCCGTGTGAGCTGAAAGAAGCAGAAGAGTTTGAGAGCAAG
Seq C2 exon
ATTGGGGAACCAAAACTCGTGTTCTGTCTGGACTGCTCTGCAGAAACCATGAATAGTCGCTATTTGATGAGAAATCAGACCAGTCAGCACTTTGATAGTGCTGAAACCATCAAGGAAGGGATTGAAGGCTATTGCCAAGCAGCAAAACCTCTGACTGCATACTATGAGAGAAAAACACAGTTATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009005_MULTIEX1-4/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
PF0040617=ADK=FE(24.4=100)
C2:
PF0040617=ADK=PD(37.8=93.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAAATGAACTTGATTGCAGTCT
R:
TCTCTCATAGTATGCAGTCAGAGGT
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]