DreEX0012367 @ danRer10
Exon Skipping
Gene
ENSDARG00000012555 | ak5
Description
adenylate kinase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-8256]
Coordinates
chr2:9058288-9065310:-
Coord C1 exon
chr2:9065147-9065310
Coord A exon
chr2:9062383-9062499
Coord C2 exon
chr2:9058288-9058482
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTGTCTGTGTGTATTTAAGGAC
3' ss Score
10.22
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGGGCCAGGATCAGGGAAAGCTCTCCAGTCAGAAAAGATAGAAGAGCGGTACAGTTTGAAGCGGCTGTGTCCCGGGGACATCCTGTGCAGTGAGCTGCAGTCTCACAGCGAGAGAGGACGCTTTCTCCGAGACCTTCTGGAAAGAGGAGAGCAGCTTCCCGAG
Seq A exon
GACACACTGCTGGATCTGTTGTGTGAGGCCATGGCATCTACTGTACGTCAGGGAAAGGGCTTCCTGGTAACAGGCTTCCCGAAGAATGAGAAGCAGGCGCAAGAATATGAAGCCAAG
Seq C2 exon
ATGGGCCAGCCAGACATAGTTCTGCTACTTGAATGTTCTGCAGACATCATGAGTCGACGGCTACAGCAGAGGGCCACCTGCAGCCTGCACAGTAAAGAAGCCCGAGACAGAGATACTCGCCGTAGAGTAGACGGGTTCTGCAGCCTGATCAATCCTGTGGTCGCTCACTATCAACACAGAGAATTTTTCCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012555_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.051 C2=0.008
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(34.2=100)
A:
PF0040617=ADK=FE(24.1=100)
C2:
PF0222312=Thymidylate_kin=FE(59.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCCTGTGCAGTGAGCTG
R:
CGACCACAGGATTGATCAGGC
Band lengths:
250-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]