GgaEX1007212 @ galGal3
Exon Skipping
Gene
ENSGALG00000009005 | E1BUE7_CHICK
Description
NA
Coordinates
chr8:19790554-19795122:-
Coord C1 exon
chr8:19794959-19795122
Coord A exon
chr8:19793863-19793979
Coord C2 exon
chr8:19790554-19790742
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTCTTTCTCATGCAGGGT
3' ss Score
11.5
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTGGCCCTGGGTCTGGCAAAAGCAGCCAATGTGAACAGTTAGCCAAGAAATATGGATTTACTCATCTGTCCACTGCTAACCTCCTCCAAAATGAGTTATCATCACTATCAGAGAGAAGTAAATTTATCAAAGACATCATGGAATGTGGTGAACCTGTGCCTGGA
Seq A exon
GGTATTGTCCTAGAGCTACTGAAAGAAGCCATGATCACAAATTTAGGAGACACAAAAGGATTTCTGATTGATGGTTATCCGTGTGAGCTGAAAGAAGCAGAAGAGTTTGAGAGCAAG
Seq C2 exon
ATTGGGGAACCAAAACTCGTGTTCTGTCTGGACTGCTCTGCAGAAACCATGAATAGTCGCTATTTGATGAGAAATCAGACCAGTCAGCACTTTGATAGTGCTGAAACCATCAAGGAAGGGATTGAAGGCTATTGCCAAGCAGCAAAACCTCTGACTGCATACTATGAGAGAAAAACACAGTTATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009005-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(34.6=100)
A:
PF0040617=ADK=FE(24.4=100)
C2:
PF0040617=ADK=PD(37.8=93.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACTGCTAACCTCCTCCA
R:
GCAGTCAGAGGTTTTGCTGCT
Band lengths:
255-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]