MmuEX0004458 @ mm10
Exon Skipping
Gene
ENSMUSG00000039058 | Ak5
Description
adenylate kinase 5 [Source:MGI Symbol;Acc:MGI:2677491]
Coordinates
chr3:152472757-152481701:-
Coord C1 exon
chr3:152481538-152481701
Coord A exon
chr3:152478341-152478457
Coord C2 exon
chr3:152472757-152472948
Length
117 bp
Sequences
Splice sites
3' ss Seq
GACCACTCTCTCTGCTGTAGGGT
3' ss Score
9.14
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTGGCCCTGGCTCTGGCAAAGGCACCCAGTGTGAGAAGCTGGCAGAAAAATATGGCTTCACCCATCTCTCTACTGGTGAGCTCCTGCGCCAGGAACTGACCTCAGAGTCAGAAAGAAGCAAACTGATCCGTGACATCATGGAGCGTGGAGATCTGGTGCCCTCG
Seq A exon
GGTGTCGTTCTGGAGCTGCTGAAGGAGGCCATGGTGGCCAGCCTGGGCAACACCAAGGGCTTCCTGATTGACGGCTACCCCCGGGAAGTGAAGCAAGGGGAAGAGTTTGGACGAAGG
Seq C2 exon
ATCGGAGACCCACACTTGGTGATCTGCATGGACTGCTCAGCAGACACCATGACTAACCGCCTTCTTCAGAGAAGCCAGAGCAGCCAGCGGGGGGAGGACGGTGCCAAGAGCATTGCCAAGCGCCTGGAGGCCTACCACCGAGCGTCCATCCCCGTCGTCACCTACTACGAGAGGAAAACACAGCTACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039058_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.025 C2=0.240
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(34.4=100)
A:
PF0040617=ADK=FE(24.2=100)
C2:
PF0040617=ADK=PD(38.2=93.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTGACCTCAGAGTCAGA
R:
GTAGTAGGTGACGACGGGGAT
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types