DreEX6014770 @ danRer10
Exon Skipping
Gene
ENSDARG00000001950 | ak1
Description
adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
Coordinates
chr5:70926225-70929743:-
Coord C1 exon
chr5:70929580-70929743
Coord A exon
chr5:70928872-70928988
Coord C2 exon
chr5:70926225-70926416
Length
117 bp
Sequences
Splice sites
3' ss Seq
CGGTGTTTTATTTCCTGCAGGAC
3' ss Score
11
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GTGGTCCCGGCTCTGGAAAGGGCACTCAGTGTGAGAAGATCGTGGCCAAGTACGGCTACACTCACCTGTCCTCAGGTGACCTGCTGCGCGCGGAGGTGGCGTCCGGTTCAGAAAGAGGCAAGCAGCTGCAGGCCATCATGCAGAAGGGAGAGCTCGTGCCTCTG
Seq A exon
GACACCGTTCTGGACATGATCAAAGACGCCATGATCGCCAAGGCTGACGTCTCTAAAGGTTACCTGATCGACGGATACCCTCGAGAGGTCAAGCAGGGGGAGGAGTTTGAGAAGAAG
Seq C2 exon
ATCGGCGCTCCGGCTCTGCTGCTGTATATCGATGCTAAAGGCGAGACGATGGTGAAGAGACTGATGAAGCGCGGAGAAACTAGCGGCCGCGCAGACGACAACGAGGAGACCATCAAGAAGCGTCTGGATCTGTATTATAAAGCCACAGAGCCCGTCATCGCCTTCTACGAGCAGCGCGGCATCGTCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001950-'13-13,'13-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.188
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(34.4=100)
A:
PF0040617=ADK=FE(24.2=100)
C2:
PF0040617=ADK=PD(38.2=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTGAGAAGATCGTGGCC
R:
ATGGTCTCCTCGTTGTCGTCT
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]