MmuEX1029028 @ mm10
Exon Skipping
Gene
ENSMUSG00000026817 | Ak1
Description
adenylate kinase 1 [Source:MGI Symbol;Acc:MGI:87977]
Coordinates
chr2:32630235-32633485:+
Coord C1 exon
chr2:32630235-32630398
Coord A exon
chr2:32631076-32631192
Coord C2 exon
chr2:32633294-32633485
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCCCTGTGCTGGACAACAGGAC
3' ss Score
5.65
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCGGACCTGGCTCAGGAAAGGGCACCCAGTGCGAGAAGATTGTACAGAAATATGGCTACACCCACCTGTCTACTGGGGACCTGCTTCGGGCAGAAGTCAGCTCTGGATCGGAGAGGGGCAAGAAGCTGTCGGCTATCATGGAGAAGGGAGAGCTAGTGCCACTG
Seq A exon
GACACGGTGCTGGACATGCTCCGAGATGCTATGTTAGCCAAAGTGGATTCTTCCAATGGCTTCCTGATCGACGGCTACCCGAGGGAGGTGAAACAGGGAGAAGAATTTGAACAGAAG
Seq C2 exon
ATTGGACAGCCCACACTGCTGCTGTATGTGGACGCAGGCGCCGAGACCATGACCCAACGACTCCTGAAGCGAGGGGAGACCAGTGGCCGCGTGGATGACAACGAGGAGACCATCAAGAAGCGGCTGGAGACTTATTACAATGCCACAGAACCTGTCATCTCCTTCTATGACAAGCGTGGCATTGTGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026817-'23-20,'23-16,26-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.022 C2=0.250
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(34.4=100)
A:
PF0040617=ADK=FE(24.2=100)
C2:
PF0040617=ADK=PD(38.2=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACACCCACCTGTCTACT
R:
GTCTCCAGCCGCTTCTTGATG
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types