HsaEX6063151 @ hg38
Exon Skipping
Gene
ENSG00000106992 | AK1
Description
adenylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:361]
Coordinates
chr9:127868321-127872853:-
Coord C1 exon
chr9:127872690-127872853
Coord A exon
chr9:127871823-127871939
Coord C2 exon
chr9:127868321-127868512
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTCCTTTGCTGTGCCCCAGGAG
3' ss Score
9.08
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GTGGGCCTGGCTCAGGGAAGGGCACCCAGTGTGAGAAGATCGTGCAGAAGTATGGCTACACCCACCTCTCCACCGGGGACCTCCTGCGGTCCGAGGTCAGCTCAGGCTCGGCCAGGGGCAAGAAGCTGTCGGAAATCATGGAGAAGGGGCAGCTGGTTCCACTG
Seq A exon
GAGACAGTGTTGGACATGCTCCGGGATGCCATGGTGGCCAAAGTCAATACTTCCAAAGGCTTCCTGATTGATGGCTACCCGCGGGAGGTGCAGCAAGGAGAAGAGTTTGAGCGACGG
Seq C2 exon
ATTGGACAGCCCACACTGCTGCTGTATGTGGACGCAGGCCCTGAGACCATGACCCAGCGGCTCTTGAAACGTGGAGAGACCAGCGGGCGTGTGGACGACAATGAGGAGACCATCAAAAAGCGGCTGGAGACCTATTACAAGGCCACAGAACCTGTCATCGCCTTCTATGAGAAACGTGGCATTGTGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106992-'5-14,'5-9,6-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.087 C2=0.265
Domain overlap (PFAM):
C1:
PF0040617=ADK=PU(14.0=87.5)
A:
PF0040617=ADK=FE(24.2=100)
C2:
PF0040617=ADK=PD(38.2=93.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTGTGAGAAGATCGTGC
R:
TGGTCTCCTCATTGTCGTCCA
Band lengths:
252-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains