GgaEX1007191 @ galGal4
Exon Skipping
Gene
ENSGALG00000029150 | AK1
Description
Adenylate kinase isoenzyme 1 [Source:UniProtKB/Swiss-Prot;Acc:P05081]
Coordinates
chr17:4879359-4880459:+
Coord C1 exon
chr17:4879359-4879522
Coord A exon
chr17:4879635-4879751
Coord C2 exon
chr17:4880268-4880459
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCTGTATGCCCCCTCCCCAGGAC
3' ss Score
7.88
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGGCCCCGGCTCAGGGAAGGGGACGCAATGCGAGAAGATTGTGCACAAGTATGGGTACACTCACCTCTCCACTGGGGACCTGCTCCGGGCAGAGGTCAGCTCGGGCTCAGAGCGGGGCAAGAAGCTGCAAGCCATCATGGAGAAGGGCGAGCTGGTTCCCCTG
Seq A exon
GACACGGTGCTGGACATGCTGCGGGACGCCATGTTGGCTAAGGCAGACACCTCCAAGGGTTTCCTCATTGACGGCTACCCTCGCGAGGTGAAGCAGGGAGAGGAGTTTGAAAAGAAG
Seq C2 exon
ATTGCCCCCCCCACGCTGCTGCTCTACGTGGATGCGGGGAAGGAGACGATGGTGAAGCGGCTGCTGAAGCGGGGAGAGACCAGCGGGCGGGTGGACGACAACGAGGAGACCATCAAGAAGCGCTTGGAGACGTACTACAAGGCTACCGAACCCGTCATCGCCTTCTACAAGGGCCGGGGCATCGTCCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029150-'6-5,'6-3,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.026 C2=0.156
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(34.4=100)
A:
PF0040617=ADK=FE(24.2=100)
C2:
PF0040617=ADK=PD(38.2=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTACACTCACCTCTCCAC
R:
TGTAGTACGTCTCCAAGCGCT
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]