BtaEX6046311 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006305 | AK1
Description
Bos taurus adenylate kinase 1 (AK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013582]
Coordinates
chr11:98552511-98556601:-
Coord C1 exon
chr11:98556438-98556601
Coord A exon
chr11:98555507-98555623
Coord C2 exon
chr11:98552511-98552702
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTGCTGCACCCCCAGGAG
3' ss Score
7.15
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GCGGGCCCGGCTCGGGGAAGGGCACCCAGTGTGAGAAGATTGTGCAGAAGTACGGCTACACCCACCTCTCCACCGGAGACCTCCTGCGGGCCGAGGTCAGCTCGGGCTCGGCTAGGGGCAAGATGCTGTCAGAAATCATGGAGAAGGGGCAGCTGGTGCCACTG
Seq A exon
GAGACAGTGCTGGACATGCTCCGAGACGCCATGGTGGCCAAGGTAGATACTTCCAAAGGCTTTCTGATCGACGGCTACCCCCGGGAGGTGCAGCAGGGGGAGGAGTTTGAGCGGAGG
Seq C2 exon
ATCGCACAGCCCACACTACTGCTGTATGTGGACGCCGGCCCTGAGACCATGACCAAGCGGCTCCTGAAGCGCGGAGAGACCAGCGGACGTGTGGACGACAACGAAGAGACCATCAAGAAGCGTCTGGAAACCTACTACAAGGCCACAGAGCCCGTCATCGCCTTCTACGAGAAACGCGGCATTGTTCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006305-'14-14,'14-7,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.250
Domain overlap (PFAM):
C1:
PF0040617=ADK=FE(34.4=100)
A:
PF0040617=ADK=FE(24.2=100)
C2:
PF0040617=ADK=PD(38.2=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGAAGTACGGCTACACC
R:
TCCAGACGCTTCTTGATGGTC
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]