BtaEX6018995 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110968467-110969924:-
Coord C1 exon
chr3:110969774-110969924
Coord A exon
chr3:110969186-110969301
Coord C2 exon
chr3:110968467-110968742
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTGATTTGCTAAGGTG
3' ss Score
5.47
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AAATCAGCCAAAATTACACCGTGTGCGCTTTGCAAATCATTGAGATCCTCAGCAGAAATGATTGAAAATACCAATAGCTTGGGAAAGACAGAGCTTTTCTGTTCTGTTAATTGCTTATCTGCTTACAGAGTTAAAATGGTTACTTCTGCAG
Seq A exon
GTGTGCAAGTTCAGTGTAACAGTTGTAAAACCTCAGCAATCCCTCAGTATCACCTAGCCATGTCAGATGGAAGTATACGCAACTTCTGCAGCTACAGTTGTGTGGTAGCTTTCCAG
Seq C2 exon
AATTTGTTCAACAAACCAGCAGGAATGAATTCTTCAGTAGTGCCCTTGTCTCAGGGCCAAGTAATTGTAAGCATCCCTACAGGTTCAACAGTGTCAGCAGGAGGGGGTAACACCTCTGCTGTTTCTCCCACTTCCATCAGCAGCTCTGCTGCAGCTGGTCTCCAGCGTCTTGCTGCCCAATCCCAACATGTGGGGTTTGCACGAAGTGTTGTAAAACTCAAGTGTCAGCACTGTAACCGTCTTTTTGCCACAAAACCAGAACTTCTCGACTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=PU(61.0=27.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAATTACACCGTGTGCGC
R:
CCTGCTGACACTGTTGAACCT
Band lengths:
245-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]