DreEX0068139 @ danRer10
Exon Skipping
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14750314-14753223:-
Coord C1 exon
chr17:14753076-14753223
Coord A exon
chr17:14751322-14751437
Coord C2 exon
chr17:14750314-14750685
Length
116 bp
Sequences
Splice sites
3' ss Seq
GCAATCTTGCTTTTCTTTAGGCA
3' ss Score
8.01
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
AAGAGTGGCAAGCGGCTTCACTGTCCATACTGCCAAGATATCAGAAACATTGATCAGATGATGGAGGGCACGAACATACAGGGCGTCACTGAGTTCTTCTGCTCTCAGAGATGTGTGGCTTTGAGTCAAGCATCTCCCAGTTTGACAG
Seq A exon
GCACTGCTTTCCCATGCACATCTTGCAAGAAGGTTGTCATTCCTCAGTATCATCTTGCCATTTCTGATGGCTCTATCAGAAACTTCTGCTCATTAGATTGTGTGGGCAAATTCCAG
Seq C2 exon
GAGAAGCTAAACTCTCCTGTGCCTCATAATCAGATGAATGGTACTTCACATACACCCCAGCCCCAGAGTGCCGTTCCCCCTCCACCTCGTCCCACTGCTGACCATCTCCAGCCCATTCAAAACTCATCCAGCACAAGCCACAATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCCTCCACCATTTGTACCACCATCAAACCCAAATCCAGTTCCCACATACGTGCCTGCTCCTGGTGTGATGAACTCGCAGGACACCCAGCAGCAGCAGCAGTGGCCGAGCAAACCTCCCTCGTCCTCAGACCCGATGCGACTGACATGCAGACAGTGCCAGAACCACTTCAGCTCCAAGCCTGAGGTCTTCCAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681-'11-21,'11-20,12-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.790
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PU(7.3=6.0)
A:
PF064679=zf-FCS=PD(90.2=94.9)
C2:
PF064679=zf-FCS=PU(56.8=16.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGATGATGGAGGGCACGA
R:
GGAGGAGGATTGTGGCTTGTG
Band lengths:
248-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]