GgaEX1000551 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr23:4683410-4684594:-
Coord C1 exon
chr23:4684444-4684594
Coord A exon
chr23:4683804-4683919
Coord C2 exon
chr23:4683410-4683682
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTGTTTCACTCTCAGGTG
3' ss Score
11.82
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
AAGTCAGCTAAAATTACACCTTGTGCACTGTGTAAATCCTTGAGATCTTCAGCTGAGATGATAGAGAGCACAAATAACTCGGGAAAAACTGAACTGTTTTGCTCTGTTAACTGCTTGTCAGCATATAGAGTAAAAATGGTTACTTCATCAG
Seq A exon
GTGTTCAAGTTCAGTGCAACAGCTGTAAAACTTCAGCCAACCCTCAGTATCACTTGGCTATGTCAGATGGGAGCGTACGCAATTTCTGCAGCTACAACTGTGTGGTAGCTTTTCAG
Seq C2 exon
AATTTGTTCAACAAACCTGCAGGAGTGAACTCCTCGGTCGTACCCCTGTCGCAAGGTCAAGTCATTGTAAGCATTCCCTCGGGGACAACGGTGTCAGCAGGTGGCACCACCTCCACTGCATCTCCCAGCTCCGGGAGCAGTTCAGCTGCAGCTGGTCTACAGAGGCTGGCTGCCCAGTCCCAGCAAGTCACTTTTGCCCGCAAGGTTGTAAAACTCTGGTGTCAGCACTGTAACAGATTATTTGCAACCAAACCAGAACTGCTTGACTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(95.3=80.4)
A:
NO
C2:
PF064679=zf-FCS=PU(60.0=26.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGTTAACTGCTTGTCAGC
R:
CTTGCGGGCAAAAGTGACTTG
Band lengths:
255-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]