Special

MmuEX0053941 @ mm9

Exon Skipping

Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126583116-126588246:-
Coord C1 exon
chr4:126588034-126588246
Coord A exon
chr4:126583765-126583880
Coord C2 exon
chr4:126583116-126583391
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTTACTTTCATTTGCTAAGGTG
3' ss Score
6.23
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATTCGACATGAAGTTAATTACCAGAACGTGGTTCATAAGCTCTGCAGTGATGCCTGTTTTTCGAAGTTTCGCTCTGCTAACAACCTCACTATGAACTGTTGTGAGAACTGTGGGGGTTACTGTTATAGTGGCTCTGGACAGTGCCATGTGCTGCAAATTGAGGGGCAGTCTAAGAAGTTTTGTAGTTCAATGTGTGTCACCTCATACAAGCAG
Seq A exon
GTGTACAAGTTCAGTGTAACAGTTGTAAAACCTCAGCAATCCCTCAGTATCATCTAGCCATGTCAGATGGAAGTATACGCAACTTCTGCAGCTACAGTTGTGTGGTAGCTTTCCAG
Seq C2 exon
AATTTGTTTAACAAACCAACTGGAATGAATTCTTCAGTAGTGCCCTTGTCTCAGGGCCAGGTAATCGTGAGCATCCCCACAGGTTCATCAGCATCTGCAGGTGGAGGGAGTACACCCGCTGTGTCCCCCACCTCGATCAACAGCTCCGCTGCTGCTGGGCTCCAGAGGTTGGCTGCCCAGTCCCAGCATGTTGGGTTTGCCCGAAGTGTGGTGAAGCTTAGGTGTCAACATTGTAACCGTCTTTTTGCCACAAAGCCAGAGCTTCTTGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)

							
A:
NO

							
C2:
PF064679=zf-FCS=PU(61.0=27.2)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000101714





     
                   









    
Main Skipping Isoform:
ENSMUSP00000030630





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000120813
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr1:35386074-35386189 
ALTERNATIVE
HsaEX6029943
(ZMYM4)
Human
(hg19)
chr1:35851675-35851790 
ALTERNATIVE
HsaEX6029943
(ZMYM4)
Rat
(rn6)
chr5:144920058-144920173 
ALTERNATIVE
RnoEX0102060
(Zmym4)
Cow
(bosTau6)
chr3:110969186-110969301 
HIGH PSI
BtaEX6018995
(ZMYM4)
Chicken
(galGal4)
chr23:4314204-4314319 
HIGH PSI
GgaEX1000551
([1])
Chicken
(galGal3)
chr23:4683804-4683919 
HIGH PSI
GgaEX1000551
([2])
Zebrafish
(danRer10)
chr19:40496526-40496641 
HIGH PSI
DreEX0087962
(zmym4)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCTCTGCAGTGATGCCTGTTT

				
R: 
TGGGGATGCTCACGATTACCT

				
Band lengths: 
254-370

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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