DreEX0087962 @ danRer10
Exon Skipping
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40494718-40498815:+
Coord C1 exon
chr19:40494718-40494868
Coord A exon
chr19:40496526-40496641
Coord C2 exon
chr19:40498612-40498815
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGTTTGCATGCTTATACAAGGTG
3' ss Score
2.86
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AAGAGTCTGAAACCTGTCGCTTGCAAAATTTGTCGCACTTTGCACCCGGTTGCCGAAATGCTGGAATGTATGAACGCAGAGGGAATCCGAGAGATTTTCTGCTCTGCCGCCTGTGTCACAGCGAATAAAGTTCAGACTGTCAGTTCTTCAG
Seq A exon
GTGCTCCCGTGGAATGCAACAGCTGTAAGCAGAAGCTGGTGCCTCAGTACCATCTGGCCATGTCTGATTCAAGCATCCAGAACTTCTGCTCCTTTTCTTGTGTAGTGTCATATCAG
Seq C2 exon
GAGTCATTTGGTAAGAAACCAAACTACCAGGTGAACACTGTAACCTCTACGACGAATGCATCAACGCCAAAACCTGCCTCTTCAGAGTCCAGCTCCTCAACCAAGACAAGCACTTCCAAGAGTCAAGTTCAGAACGTCACAAAGATCCCCTGCTCACAGTGTCTCAACTCATTCTTCCACAAACCAGAACTGCTGGATTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823-'8-17,'8-16,11-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.371
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=92.3)
C2:
PF064679=zf-FCS=PU(60.0=35.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGAAACCTGTCGCTTGC
R:
TGTCTTGGTTGAGGAGCTGGA
Band lengths:
256-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]