RnoEX0102060 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144919412-144924533:-
Coord C1 exon
chr5:144924321-144924533
Coord A exon
chr5:144920058-144920173
Coord C2 exon
chr5:144919412-144919690
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTTACTTTCATTTGCTAAGGTG
3' ss Score
6.23
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATTCGACATGAAGTTAATTACCAGAACGTGGTTCATAAGCTCTGCAGTGATGCCTGTTTCTCTAAGTTCCGCTCTGCTAACAACCTCACTATGAACTGTTGTGAGAACTGTGGGGGTTACTGCTATAGTGGCTCTGGACAGTGCCATGTGCTTCAGATTGAGGGACAGTCTAAGAAGTTTTGTAGTTCAATGTGTGTCACCTCATACAAGCAG
Seq A exon
GTGTCCAAGTTCAGTGTAACAGTTGTAAAACCTCAGCAATCCCTCAGTACCATCTAGCCATGTCAGACGGGAGCATACGCAACTTCTGCAGCTACAGTTGTGTGCTAGCTTTCCAG
Seq C2 exon
AACTTGTTTAACAAACCAACTGGAATGAATTCTTCAGTAGTGCCCTTGTCTCAGGGCCAGGTGATCGTGAGCATCCCCACTGGTTCATCAGCATCCGCAGGGGGAGGGAGTACCCCAGCTGCCTCCCCCACCTCTGTCCACAGCTCCTCTGCGGCTGCTGGGCTCCAGAGGCTGGCTGCCCAGTCCCAGCATGTTGGCTTTGCACGAAGTGTGGTGAAGCTTAGGTGTCAACATTGTAACCGTCTCTTTGCCACAAAGCCAGAGCTTCTTGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397_MULTIEX3-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(55.0=31.0),PF064679=zf-FCS=WD(100=62.0)
A:
PF064679=zf-FCS=PD(92.5=94.9)
C2:
PF064679=zf-FCS=PU(61.0=26.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCGCTCTGCTAACAACCT
R:
GATGCTGATGAACCAGTGGGG
Band lengths:
243-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]