BtaEX6019005 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110946500-110956977:-
Coord C1 exon
chr3:110956806-110956977
Coord A exon
chr3:110947083-110947136
Coord C2 exon
chr3:110946500-110946679
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTGCTTTTCTTTTTCTTTAGAAT
3' ss Score
10.58
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATGCCTGTCCCTATGCTTATTCCATCCTCAATGGGTAACGAAGATAAAGTCACTGAGAGTATTGAGGACATTAAGGAAAAGCTTCCCTCACATCCTTTTGAAGCTGATCTCCTTGAAATGGCAGAAATGATTGCAGAAGATGAGGAGAAGGAGAAGACTCTATCTCAGGGAG
Seq A exon
AATCCCAAACTTCTGAACAGGAACTCTTTTTAGACACCAAGATATTTGAAAAAG
Seq C2 exon
ACCAAGGAAGTACTTACAGTGGTGATCTTGAATCAGAGGCAGTATCTACTCCACATAGCTGGGAGGAAGAATTAAATCATTATGCCTTAAAGTCAAATACTGTGCAAGAGGCTGATTTAGAAGTGAAGCAGTTCTCAAAAGGGGAAACTGAACAGGATCTGGAAGCAGATTTCCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023-'23-27,'23-26,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=0.632 C2=0.803
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGATCTCCTTGAAATGGCA
R:
TTCCTCCCAGCTATGTGGAGT
Band lengths:
139-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]