MmuEX0053938 @ mm10
Exon Skipping
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126889996-126893466:-
Coord C1 exon
chr4:126893295-126893466
Coord A exon
chr4:126891015-126891068
Coord C2 exon
chr4:126889996-126890175
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGTTTGCTTTTTTTCTTTAGAAT
3' ss Score
9.99
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATGCCTGTTCCCATGTTTATTCCATCCTCTATGGATAATGATGAGAAAGCAACTGAGGGCATTGAAGACATTAAAGAGAAACTTGCCACACATCCGTTTGAAGCAGATCTCCTTGAGATGGCAGAAATGATTGCAGAAGATGAAGAGAAGGAGAAAACTTTATCCCAGGGAG
Seq A exon
AATCTCAAACTTCTGAACAAGAACTGTTTCTAGACACCAAGATATTTGAAAAAG
Seq C2 exon
ACCAAGGAAGTACATATAGTGGTGATCTTGAGTCAGAAGCAGTATCAACTCCACACAGCTGGGAAGAAGAGCTGAATCATTACGCATTAAAGTCGAATGCTGTGCAAGATGCTGATTCAGAACTGAAACCGTTTTCAAAAGGGGAAACAGAGCAGGATCTGGAGGCAGACTTCCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=0.697 C2=0.898
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000106108fB20108
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTTTGAAGCAGATCTCCT
R:
CTTCCCAGCTGTGTGGAGTTG
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types