GgaEX1000560 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr23:4676589-4677745:-
Coord C1 exon
chr23:4677574-4677745
Coord A exon
chr23:4676886-4676939
Coord C2 exon
chr23:4676589-4676768
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTTCTTTTTCTAAAGGCT
3' ss Score
8.5
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTACCCGTTCCCATGCTTTTCCCAACTACTTTGGATAATGCTGATAAGATCCTTGAAACAATTCAGGATATCAAAGAAAAGATTCCCATAAGTCCATTTGAAGCAGATCTCCTTCAGATGGCAGAAATGATTGCAGAAGATGAGGAGAAAGACAAAACACACTCTCATGGTG
Seq A exon
GCTCTCAAACATCCGAGCATGAGCTCTTCCTGGACCCCAAGATGTTTGAGAAAG
Seq C2 exon
ACCAAGGTAGCACTTACAGTGGAGATCTAGAATCAGAAGCAGTGTCCACTCCACACAGCTGGGAAGAAGAGTTAAATCACTATGCCTTACGATCAAATGCCCTGCCAGAACCAGATCCAGAACCGAAGCAGATCTCCAAAGGTGAAGTGGAACAGGACCTGGAAGCAGATTTTCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-'25-28,'25-27,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=0.895 C2=0.967
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATCTCCTTCAGATGGCA
R:
TCTTCTTCCCAGCTGTGTGGA
Band lengths:
140-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]