RnoEX0102065 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144904719-144907761:-
Coord C1 exon
chr5:144907590-144907761
Coord A exon
chr5:144905681-144905734
Coord C2 exon
chr5:144904719-144904898
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTTTTTTTTTTTAGAAT
3' ss Score
11.4
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATGCCTGTTCCCATGTTTATTCCATCCTCTATGAACAATGAAGAGAAAGCCTCTGAGGGCATTGAAGACATTAAAGAGAAACTTGCCACACATCCATTTGAGGCAGATCTCCTTGAGATGGCAGAAATGATTGCAGAAGATGAAGAGAAGGAAAAGACTTTATCCCAGGGAG
Seq A exon
AATCCCAAACTTCTGAACAAGAACTCTTTCTAGACACCAAAATATTTGAAAAAG
Seq C2 exon
ACCAAGGAAGTACGTATAGTGGTGACCTCGAGTCCGAGGCAGTATCAACCCCACATAGCTGGGAAGAAGAACTGAATCATTACGCCTTAAAGTCGAATGCTGTGCAAGATGCTGATTCAGAACTGAAACAGTTCTCCAAAGGGGAAACAGAACAGGATCTGGAGGCAGATTTTCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397_MULTIEX4-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=0.544 C2=0.885
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACACATCCATTTGAGGCA
R:
TTGATACTGCCTCGGACTCGA
Band lengths:
136-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]