HsaEX6029938 @ hg19
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35862978-35864644:+
Coord C1 exon
chr1:35862978-35863146
Coord A exon
chr1:35864014-35864067
Coord C2 exon
chr1:35864465-35864644
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTGCTTTTCTTTTTCTTTAGAGT
3' ss Score
10.31
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATGCCTGTCCCTATGCTTATTCCATCTTCAATGGATAGTGAAGATAAAGTCACAGAGAGTATTGAAGACATTAAAGAAAAGCTTCCCACACATCCATTTGAAGCTGATCTCCTTGAGATGGCAGAAATGATTGCAGAAGATGAAGAGAAGAAGACTCTATCTCAGGGAG
Seq A exon
AGTCCCAAACTTCTGAACACGAACTCTTTCTAGACACCAAGATATTTGAAAAAG
Seq C2 exon
ACCAAGGAAGTACATACAGTGGTGATCTTGAATCAGAGGCAGTATCTACTCCACATAGCTGGGAGGAAGAGCTGAATCACTATGCCTTAAAGTCAAATGCTGTGCAAGAGGCTGATTCAGAATTGAAGCAGTTCTCAAAAGGGGAAACTGAACAGGACCTGGAAGCAGATTTTCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-'36-39,'36-38,37-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.901 A=0.596 C2=0.880
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATGGCAGAAATGATTGCAGA
R:
ATTCAGCTCTTCCTCCCAGCT
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)