BtaEX6019006 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110945996-110947136:-
Coord C1 exon
chr3:110947083-110947136
Coord A exon
chr3:110946500-110946679
Coord C2 exon
chr3:110945996-110946090
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTTATTATTTCAGACC
3' ss Score
8.95
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
AATCCCAAACTTCTGAACAGGAACTCTTTTTAGACACCAAGATATTTGAAAAAG
Seq A exon
ACCAAGGAAGTACTTACAGTGGTGATCTTGAATCAGAGGCAGTATCTACTCCACATAGCTGGGAGGAAGAATTAAATCATTATGCCTTAAAGTCAAATACTGTGCAAGAGGCTGATTTAGAAGTGAAGCAGTTCTCAAAAGGGGAAACTGAACAGGATCTGGAAGCAGATTTCCCCTCAG
Seq C2 exon
AATCCTTTGACCCATTAAACAAGGGACAGGGAATCCAGGTACGTTCCCGAACGAGAAGACGACACAGAGACGGCTTCCCCCAGCCCAGACGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023-'25-28,'25-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=0.803 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAAACTTCTGAACAGGAACT
R:
TCTTCGTCTGGGCTGGGG
Band lengths:
147-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]