HsaEX6029937 @ hg19
Exon Skipping
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35864014-35865177:+
Coord C1 exon
chr1:35864014-35864067
Coord A exon
chr1:35864465-35864644
Coord C2 exon
chr1:35865083-35865177
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTGTTATCTATATATTTCAGACC
3' ss Score
8.61
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
AGTCCCAAACTTCTGAACACGAACTCTTTCTAGACACCAAGATATTTGAAAAAG
Seq A exon
ACCAAGGAAGTACATACAGTGGTGATCTTGAATCAGAGGCAGTATCTACTCCACATAGCTGGGAGGAAGAGCTGAATCACTATGCCTTAAAGTCAAATGCTGTGCAAGAGGCTGATTCAGAATTGAAGCAGTTCTCAAAAGGGGAAACTGAACAGGACCTGGAAGCAGATTTTCCATCAG
Seq C2 exon
ACTCCTTTGACCCACTTAATAAAGGACAGGGAATCCAGGCACGTTCCCGAACAAGACGACGACACAGAGATGGCTTCCCCCAACCCAGACGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-'37-40,'37-39,38-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=0.880 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCCAAACTTCTGAACACGA
R:
CTTCGTCTGGGTTGGGGGAAG
Band lengths:
148-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)