GgaEX1000561 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr23:4305891-4307339:-
Coord C1 exon
chr23:4307286-4307339
Coord A exon
chr23:4306989-4307168
Coord C2 exon
chr23:4305891-4306062
Length
180 bp
Sequences
Splice sites
3' ss Seq
TCTGATCGCTCTCGTTACAGACC
3' ss Score
9.34
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCTCTCAAACATCCGAGCATGAGCTCTTCCTGGACCCCAAGATGTTTGAGAAAG
Seq A exon
ACCAAGGTAGCACTTACAGTGGAGATCTAGAATCAGAAGCAGTGTCCACTCCACACAGCTGGGAAGAAGAGTTAAATCACTATGCCTTACGATCAAATGCCCTGCCAGAACCAGATCCAGAACCGAAGCAGATCTCCAAAGGTGAAGTGGAACAGGACCTGGAAGCAGATTTTCCGTCAG
Seq C2 exon
GGACGAAAGAAGTCTGTAGTTGCTGTAGAGCCCCGCAATCTGATGCAGGGCTCCTACCCAGGATGCTCTGTTTCTGGGATGACCCTAAAGTATATGTATGGGGTAAATGCCTGGAAGAACTGGGTCCAATGGAAAAATGCACAGGAGGAGCAAGGGGACCTGAAGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499_MULTIEX1-23/24=22-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=0.967 C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAAACATCCGAGCATGAGC
R:
AAACTTCAGGTCCCCTTGCTC
Band lengths:
220-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]