DreEX0068142 @ danRer10
Exon Skipping
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14739642-14742768:-
Coord C1 exon
chr17:14742636-14742768
Coord A exon
chr17:14742333-14742542
Coord C2 exon
chr17:14739642-14739736
Length
210 bp
Sequences
Splice sites
3' ss Seq
TGATTTATTGTCATGTTTAGACC
3' ss Score
7.28
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GTGCCCGTACCCATGGTTATTCCAGGACCTCAAGATGCTCCTGAACAGAAAGACACTAAATGCAGCCTGCCTGCACAGAGCTCGGTAGAAGATGATGAGCCGGAGAAGGGAAAAGACAAACCTGCGTCCCATG
Seq A exon
ACCAGGGCAGCACTTACAGTGGAGATCTGGAGTCAGAGGCCCAATCGACACCATTAAGCTGGGCAGAAACTGAGGATGCAGGAGCCAGCGTGAAGCCAGCGGTGCCAGCAACTGAAGCAGAGGAGCCGTCAGCTGAAGCTGAGGACCATACGCCTCCAACCACCAATTTGACAAAGGAACAGCCTGATCTGGAAAATGATTTTCCTCTCA
Seq C2 exon
CAACGGCTGACCCCGGATCAGCAAAAGAGAACAGACTGGTGTTGACGCTGAAGAGACGTAAGAGGGGCAGAGATGGCCACCCTCCTAGGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681-'23-33,'23-32,24-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCGTACCCATGGTTATT
R:
CCTTTTCCTAGGAGGGTGGCC
Band lengths:
228-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]