RnoEX0102046 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144904225-144905734:-
Coord C1 exon
chr5:144905681-144905734
Coord A exon
chr5:144904719-144904898
Coord C2 exon
chr5:144904225-144904319
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTTGGTTTCTTCACTTGCAGACC
3' ss Score
10.36
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
AATCCCAAACTTCTGAACAAGAACTCTTTCTAGACACCAAAATATTTGAAAAAG
Seq A exon
ACCAAGGAAGTACGTATAGTGGTGACCTCGAGTCCGAGGCAGTATCAACCCCACATAGCTGGGAAGAAGAACTGAATCATTACGCCTTAAAGTCGAATGCTGTGCAAGATGCTGATTCAGAACTGAAACAGTTCTCCAAAGGGGAAACAGAACAGGATCTGGAGGCAGATTTTCCATCAG
Seq C2 exon
AATCTTTTGACCCACTTAATAAAGGACAGGGAATCCAGGCGCGTTCTCGAACAAGACGAAGACACAGAGATGGCTTCCCCCAGCCCAGACGACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397-'42-44,'42-43,44-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.544 A=0.885 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000016992fB17072
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCCAAACTTCTGAACAAGAACT
R:
TCGTCTGGGCTGGGGGAA
Band lengths:
146-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]