DreEX0087959 @ danRer10
Exon Skipping
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40512206-40515340:+
Coord C1 exon
chr19:40512206-40512377
Coord A exon
chr19:40514712-40514924
Coord C2 exon
chr19:40515243-40515340
Length
213 bp
Sequences
Splice sites
3' ss Seq
TTATTATTATTTTTACTCAGATC
3' ss Score
8.12
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
GTTCCAGTGCCCTTGTTCTTCCCCACGACACTGGACAGTGCAGAGAGCATTGTACAGACCATTCAGGAAATCAAAGAGAAGATCCCTGATGATCCTCTGGAGGCCGACCTCATTATGATGGCGGAGATGGTGGCGGAGGATGCAGAGAAGGAGAAACGCATCAGCTCCACTG
Seq A exon
ATCAGCCTGTACACATAATGGAGGACCTTGATCTGGAAGCCCTGTCCAGTAATCTGAGCTGGGAGGAAGACTCTGTGTCTTCTGCTCAGACATGGGATCAAGCTCCAGAGCCGGAGCGTTTTCTTCCTCCTCCGTCCAGATCTGCCACAGTTACTCCCGTCTCCAGCACAGCAGAGGAGCCACAGATGGACCTGGAGGCAGATTTCCCAATCG
Seq C2 exon
AGAGCATTGAACTCTTCAGAGAACAAACGCCAAATAAGACAACAGGCAAACGGAAATCTCGCAAGAGAGCACGCGATGGCTTTCCTCAGAAGAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823-'23-32,'23-30,24-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=0.750 C2=0.848
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGTGCCCTTGTTCTTCC
R:
CCGTTTCTTCTGAGGAAAGCCA
Band lengths:
269-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]