BtaEX6019029 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021948 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:HGNC:13050]
Coordinates
chr3:111232434-111243044:+
Coord C1 exon
chr3:111232434-111232588
Coord A exon
chr3:111241895-111241979
Coord C2 exon
chr3:111242795-111243044
Length
85 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTCTTTTTCTTTAAGGAA
3' ss Score
10.24
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GCTATCTACCACCAAGAAGAAATCTATTTAGACTGAGAAATCCCTTTACGTAAAAAATTAGGATGAAAGAACCTTTGGATGGTGAATGTGGCAAAGCACTGGCACCACAGCAAGCCCTTCTGGACAAAATTAAAGAAGAACCTGACAATGCTCAA
Seq A exon
GAATATATACATGCTTCAAAGCCCAAAGCTCAGGAAAGTGAACTGAAAATCAGTGCTGTGTTTTCAGTCAGTGATAGTCCTCTTG
Seq C2 exon
CCCAACAGTTGACCCCAGGCTTTCAGCTTTCTCTTGCATCATCTGGCCCAAATGTATCACTTCCTTCAGTTCCAGCTGTAGCTCTTCAGGTTTTTTGCTCTGGTTGTAAAAAAATGCTTTATAAAGGTCAAACTGCATTTCATAAGACAGGATCTACTCAGCTCTTTTGCTCCACAAGGTGCATCATCGGACATTCTTCGTCTGTCTGCCTACTACCTCCTCCCAAGAAAACCTGTGCAAACTGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021948-'3-3,'3-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=0.207 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=46.4),PF064679=zf-FCS=PU(27.3=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTTGGATGGTGAATGTGGC
R:
GCTACAGCTGGAACTGAAGGA
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]