MmuEX6096162 @ mm9
Exon Skipping
Gene
ENSMUSG00000042408 | Zmym6
Description
zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505]
Coordinates
chr4:126755652-126765798:+
Coord C1 exon
chr4:126755652-126755790
Coord A exon
chr4:126764219-126764285
Coord C2 exon
chr4:126765573-126765798
Length
67 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTCTTGTTTTTAAGGAA
3' ss Score
11.83
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
GCGTCATCTTAGTTTTAGATGGGATAAGAACTCGGCATAAGCACTTAGAATGAAAGAACCTTTGGATGGTGGATGTGACAAAGCAATGGCACAACAAGGGCTTCTGGACAGAATTAAAGAAGAACCTGATGATGCTCAT
Seq A exon
GAATATGGACCTCAAGAAAGTGAACTAAAAATCAGTGCCGTGTTTTCAGCCGGTGACACTTCTCTCG
Seq C2 exon
GCTTTCAGGTTGGTCTACCGTCATCCGGCCCGAGTACATCATTTCCTGCAGTTCCAGCTGCTCAAGTGTTTTGTTTTGGTTGTAAAAAACTGCTTCTTAAGGGACAACCTACCTACCGGAAGGCCGGATTTGCCCAGCTTTACTGCTCCATGGGATGCATCATCAGATTCTCCTCCGCAGTCTGCGTGCCACCTCTTCCCAAGAGAACCTGTGCACATTGCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042408-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=PU(27.3=15.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACAAGGGCTTCTGGACA
R:
CCGGTAGGTAGGTTGTCCCTT
Band lengths:
169-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: