HsaEX6029917 @ hg19
Exon Skipping
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:13050]
Coordinates
chr1:35484954-35496314:-
Coord C1 exon
chr1:35496148-35496314
Coord A exon
chr1:35485984-35486068
Coord C2 exon
chr1:35484954-35485203
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTTTTTTTAAAGGAG
3' ss Score
9.66
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GTGTCCAACTATCCATTACCAAGAAGAAATCTATTCGTTTGAGCCTGAGACACTCTTTGAGGTAAAAAATTAGAATGAAAGAACCTTTGGATGGTGAATGTGGCAAAGCAGTGGTACCACAGCAGGAGCTTCTGGACAAAATTAAAGAAGAACCAGACAATGCTCAA
Seq A exon
GAGTATGGATGTGTCCAACAGCCAAAAACTCAAGAAAGTAAATTGAAAATTGGTGGTGTGTCTTCAGTTAATGAGAGACCTATTG
Seq C2 exon
CCCAGCAGTTGAACCCAGGCTTTCAGCTTTCTTTTGCATCATCTGGCCCAAGTGTGTTGCTTCCTTCAGTTCCAGCTGTTGCTATTAAGGTTTTTTGTTCTGGTTGTAAAAAAATGCTTTATAAGGGCCAAACTGCATATCATAAGACAGGATCTACTCAGCTCTTCTGCTCCACACGATGCATCACCAGACATTCTTCACCTGCCTGCCTGCCACCTCCTCCCAAGAAAACCTGCACAAACTGCTCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867-'4-9,'4-7,6-9=AN
Average complexity
A_S
Mappability confidence:
90%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.201 A=0.337 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=48.8),PF064679=zf-FCS=PU(27.3=14.3),PF060447=DRP=PU(14.1=10.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGAGACACTCTTTGAGGT
R:
CACTTGGGCCAGATGATGCAA
Band lengths:
180-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)