RnoEX0102076 @ rn6
Exon Skipping
Gene
ENSRNOG00000013865 | Zmym6
Description
zinc finger MYM-type containing 6 [Source:RGD Symbol;Acc:1561833]
Coordinates
chr5:145139719-145149788:+
Coord C1 exon
chr5:145139719-145139857
Coord A exon
chr5:145148296-145148362
Coord C2 exon
chr5:145149563-145149788
Length
67 bp
Sequences
Splice sites
3' ss Seq
TCCCCTGTTTTGTTTTTAAGGAA
3' ss Score
11.45
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GAGCCATCTTAGTTTTAGATGGGAGAAGAACTCTGCATAAACAGTTAGAATGAAAGAACCTTTGGATGGGGGATGCGACAAAGCAATGGCACAACAAGGGCTTCTGGACAGAATTAAAGAAGAACCTGATGATGCTCAT
Seq A exon
GAATATGGACCTCAGGAAAGTGAACTAAAAATCAGTGCTGTGTTTTCAGCCAGTGACACTTCTCTTG
Seq C2 exon
GTTTTCAGGTTGGTCTACCATCCCCTGGCCTGAGTGCATCATTTCCTGCAGTTCCAGCTGCTCAAGTGTTTTGTTTTGGTTGTAAACAACTGCTTCGTAAGGGGCAGCCTACGTACCGTAAGGCAGGGTCTGCCCAGCTCTTCTGTTCCATGGGATGTGTCATCACGTTCTCCTCAGCGGTCTGCGTGCCTCCTCTTCCCAAGAGAACCTGCGCACACTGCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013865_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.139 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064679=zf-FCS=WD(100=53.9),PF064679=zf-FCS=PU(27.3=15.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACAAAGCAATGGCACAAC
R:
GCCCCTTACGAAGCAGTTGTT
Band lengths:
170-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]