BtaEX6019043 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005784 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr3:112885807-112889837:+
Coord C1 exon
chr3:112885807-112885880
Coord A exon
chr3:112888934-112889045
Coord C2 exon
chr3:112889605-112889837
Length
112 bp
Sequences
Splice sites
3' ss Seq
GACCCGCCATCCCGCCACAGGTT
3' ss Score
7.29
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
ACCCCACACTGACCACATGTGTGGACCCCGGCGTGCCGCAGTTCGGGATACAGAACAACTCCCAAGGCTACCAG
Seq A exon
GTTGGAAGCACCGTGCTCTTCCGTTGTCAGAAAGGTTACCTGCTCCAGGGCTCCACCTCCAGGACGTGCCTCCCCAACCTGACCTGGAGCGGAACCCCGCCCGACTGTGTCC
Seq C2 exon
CCCACCACTGCAAGCAGCCAGAGACACCAAGCCATGCCAACGTCGGGGCGCTGGACCTGCCCTCCATGGGCTACACGCTCATCTATTCCTGCCAGGAAGGCTTCTCCCTCAAGGGTGGCTCCGAGCACCGTACCTGCAAAGCAGATGGCAGCTGGACAGGCAAACCACCCATCTGCCTGGGTGCGTGTGCCCCCTCGGTGAACCTCTCCAGGGTGGGAGGCCAAAGGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005784-'81-78,'81-77,82-78=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.090
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(32.7=72.0)
A:
PF0008415=Sushi=PD(63.6=92.1)
C2:
PF0008415=Sushi=WD(100=71.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACACTGACCACATGTGTG
R:
CAGATGGGTGGTTTGCCTGTC
Band lengths:
247-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]