DreEX6073831 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:36550764-36552689:-
Coord C1 exon
chr19:36552616-36552689
Coord A exon
chr19:36552411-36552522
Coord C2 exon
chr19:36550764-36550943
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGGTGTGTTTCTATCAACAGATT
3' ss Score
10.13
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
Exon sequences
Seq C1 exon
ATCCCAGTCACACCAGCTGTGTGGATCCTGGCACTCCTCTCTTCGGCCACCAGAACAACTCTCAAGGCTACCAG
Seq A exon
ATTGGTAGTTCAGTGTACTACAGCTGCAGGAAGGGTCATCTTCTTCTGGGTTCAATCTCACGGACGTGTCTACCAAACCTCACCTGGAGCGGCATGCAGCCTGAGTGCATAG
Seq C2 exon
CTCATCACTGTAATCAGCCAGAGCTGCCTGCTCAGGCAGATGTAGGTGCCATAGAGCTGCCGTCTCTGGGTTATACTCTCATCTACACCTGTCAGCCTGGTTTTTACCTCGCTGGAGGCTCTGAACATCGAACCTGCAGGGCTGATGGCAGCTGGACAGGGAAACCTCCACTGTGTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'72-72,'72-71,73-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(32.7=72.0)
A:
PF0008415=Sushi=PD(63.6=92.1)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCAGTCACACCAGCTGT
R:
CACACAGTGGAGGTTTCCCTG
Band lengths:
251-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]