GgaEX7010545 @ galGal4
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr23:4792003-4795431:+
Coord C1 exon
chr23:4792003-4792076
Coord A exon
chr23:4793210-4793321
Coord C2 exon
chr23:4795252-4795431
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTCCTGTGGAAACAGGTG
3' ss Score
7.47
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
ACCCAACCCTGACGACGTGTGCAGACCCCGGCGTGCCGCTCTATGGGATGCAGAACAACTCGCAGGGCTACCAG
Seq A exon
GTGGGAAGCATGATTTTCTTCAAGTGCCAGAAGGGCTACCTGCTGCAGGGCTCCACCACCAGGACCTGCCTGCCCAACCTGACGTGGAGCGGCGTGCAGCCCGACTGCGTCC
Seq C2 exon
CTCACCACTGTAAGCAGCCTGAGACCCCCTCCCACGCCAACGTCGGCGCTCTGGATTTGCCATCTCTGGGCTACACCTTGATCTATTCCTGTCAGAGTGGGTACTACCTCACCGGGGGGTCTGAGCATCGGACCTGCAAAGCAGATGGCAGCTGGACGGGGAAGCCTCCCATCTGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602-'77-77,'77-76,78-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(32.7=72.0)
A:
PF0008415=Sushi=PD(63.6=92.1)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACGACGTGTGCAGACC
R:
GAGGCAGATGGGAGGCTTCC
Band lengths:
245-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]