RnoEX0024852 @ rn6
Exon Skipping
Gene
ENSRNOG00000007057 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:RGD Symbol;Acc:1565728]
Coordinates
chr5:146724605-146728053:+
Coord C1 exon
chr5:146724605-146724678
Coord A exon
chr5:146727274-146727385
Coord C2 exon
chr5:146727874-146728053
Length
112 bp
Sequences
Splice sites
3' ss Seq
CACTTCTGTCCTTGCGGCAGGTT
3' ss Score
7.88
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
ATCCCACGCTGACCACGTGTGCCGATCCCGGCATGCCACAGTTCGGGATACAGAACAGCTCCCAGGGCTACCAG
Seq A exon
GTTGGGAGCACGGTGCTATTCCGTTGTCAGAAAGGTTACCTGCTTCAGGGATCCACCACCAGGACCTGCCTTCCCAACCTGACCTGGAGTGGGACCCCACCTGACTGTGTCC
Seq C2 exon
CCCACCACTGCAAGCAACCAGAGACGCCCACACATGCCAATGTTGGAGCCCTGGACCTGCCATCCGTGGGTTACACACTCATCTACTCCTGCCAGGAGGGCTTCTCCCTCAGGGGTGGCTCCGAACACCGGACCTGCAAAGCCGACGGCAGCTGGACGGGCAAACCACCCATCTGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007057_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.026 C2=0.213
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(32.7=72.0)
A:
PF0008415=Sushi=PD(63.6=92.1)
C2:
PF0008415=Sushi=WD(100=91.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCACGTGTGCCGATC
R:
CCAGGCAGATGGGTGGTTTG
Band lengths:
246-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]