BtaEX6019096 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019555 | ZSCAN20
Description
zinc finger and SCAN domain containing 20 [Source:HGNC Symbol;Acc:HGNC:13093]
Coordinates
chr3:112936526-112939199:-
Coord C1 exon
chr3:112939123-112939199
Coord A exon
chr3:112938763-112938847
Coord C2 exon
chr3:112936526-112937209
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTGTATGTTCCACAGGAA
3' ss Score
9.86
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTGTCCTCACTCCCCGAGTCCCTGCTCTCCCAAAGACGGGGAGCGTCGGAGATTGGGAGGTGACCGCGGAGTCTCAG
Seq A exon
GAAGCCCTGGGTCCCGACAGACACGCTGAGAAGGAATTCTGCACGGACCCCCCAGGAGACAACTGTGGGAACGGCTTGTCCCTGG
Seq C2 exon
GAGTTCCGGTTTCAAAACCAACCATCATTGCCCAGCAAGAGCAGGGACCAGAGTTTTGGGGTCCAAGACTTGTAAATTCTGGAAAAAAGAACTCTGCAGATTACAGCGTGGATCCTGAGCAGACTAAACCAGCTCAGGCATTGGCCTGGAGGGACTGCAAGACCTGGGAAGAACGGTGCCCGGCGCCCGTGGAGGATGTGAAAGTGTCGGGTGTGCACTGGAGCTACGAGGAGACCAAGACTTTCCTGGCGATTTTGAGCGAGTCGCCTTTTTCTGAAAAGCTCCGGACTTGTCACCAGAACCGCCAGGTGTACCGAGCCATCGCAGAACGGCTGAGGGCACGGGGCTTCCTACGGACGCTGGAGCAGTGTCGCTACAGGGTCAAGAACCTGCTACGGAATTACCGGAAAGCCAAGAGCAGCCACCCGCCGGGGACCTGCCCCTTCTACGAGGAGCTGGAGGCCCTGGTTAGGGCTCGGACAGCCATCAGAGCCTCGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019555-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.897 C2=0.362
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138371=Myb_DNA-bind_4=WD(100=37.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCCTGCTCTCCCAAAGA
R:
TGCTCAGGATCCACGCTGTAA
Band lengths:
183-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]