HsaEX0074562 @ hg38
Exon Skipping
Gene
ENSG00000121903 | ZSCAN20
Description
zinc finger and SCAN domain containing 20 [Source:HGNC Symbol;Acc:HGNC:13093]
Coordinates
chr1:33488465-33491702:+
Coord C1 exon
chr1:33488465-33488651
Coord A exon
chr1:33489518-33489602
Coord C2 exon
chr1:33491025-33491702
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTGTGCATCTCGCAGGAA
3' ss Score
8.48
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GGACTGGAATTGCATACAGAAGAGACCAGGCCCTTAAAGACAGGGGAAGAAGCTCAGAGCTTCCAGCTGCAGCCAGTGGATCCCTGGCCTGAGGGACAGTCCCAGAAGAAGGGGGTGAAGAATACATGCCCTGACCTTCCCAATCACCTAAATGCCGAGGTGGCACCACAGCCTTTGAAAGAGAGTG
Seq A exon
GAAGCCCTGGGCCCTGGCAAACATGCTGAGAAGGAGCTCTGTAAAGACCCCCCAGGAGACGACTGTGGGAACAGCGTGTGCCTGG
Seq C2 exon
GAGTTCCAGTTTCAAAACCAAGTAATACCTCCGAGAAAGAGCAAGGACCAGAGTTTTGGGGTCTAAGTCTTATAAATTCTGGGAAAAGGAGCACTGCAGATTACAGCCTGGATAATGAGCCAGCTCAGGCATTGACCTGGAGGGATTCAAGAGCCTGGGAGGAACAATACCAGTGGGATGTGGAGGACATGAAGGTGTCAGGTGTTCACTGGGGCTATGAGGAGACCAAGACTTTCCTGGCAATTTTGAGTGAATCTCCTTTCTCTGAAAAGCTCCGGACTTGTCACCAGAACCGCCAGGTATATCGGGCCATTGCAGAGCAGCTAAGGGCAAGGGGCTTCCTGCGGACACTGGAGCAATGTCGCTATAGGGTCAAAAACCTCCTACGGAATTACCGGAAAGCCAAGAGCAGCCACCCACCAGGTACCTGCCCCTTCTATGAGGAGCTGGAGGCCCTGGTCAGGGCTCGGACAGCCATCAGAGCCACAGATGGCCCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121903_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.828 C2=0.220
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NO
C2:
PF138371=Myb_DNA-bind_4=WD(100=37.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCCTGACCTTCCCAATC
R:
CAGGCTGTAATCTGCAGTGCT
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development