RnoEX0102290 @ rn6
Exon Skipping
Gene
ENSRNOG00000005886 | Zscan20
Description
zinc finger and SCAN domain containing 20 [Source:RGD Symbol;Acc:1562996]
Coordinates
chr5:146766622-146768849:-
Coord C1 exon
chr5:146768773-146768849
Coord A exon
chr5:146768450-146768534
Coord C2 exon
chr5:146766622-146767311
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTGTCTGTGTCACAGGAA
3' ss Score
10.3
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTGTCTTCACACCCCAAGCCCCAAGTGTTCCAAAGATGGCGAGCGCTGGAGATTGGGAGATGGCAGCCAAGTCCCAG
Seq A exon
GAAACCCTGAGCCCCAGTAGACAAGCCCAGGAGGAGCCCTGCCAGGACCCCGAAGGAGAGGATTGTGGGAACAGTGCATGCCTGG
Seq C2 exon
GAGTTCCAGCTTCAAAGCCAAGTGTCGCCTCCCAGCACGAGCAAGGAGCAGAGACTTTGGGTCTGAGCCTTCTAAATTTTGGGACTGGGAGCGCCGCAGATGGTAGCGTGGACAGTGAGCAAGACAAGGCAGCCCGGGGAGCAGCCCAGGCAGACGCAAGGGCCTGGGTCGAGCCATGCCAATGGGGCACGGAGGACATGAAGGTGTCAGGTGTGCACTGGGGCTATGAGGAAACCAAGGCTTTCCTGGCCATCTTAAGTGAGTCCCCCTTCTCTGAGAAGCTCCAGACTTGTCACCAGAACCGCCAGGTATACCGGGCCATTGCCGAGCGGCTGAGAGCACGGGGCTTCCTGCGGACTCTGGAGCAGTGCCGCTATAGGGTCAAAAACCTGCTACGGAATTACCGGAAGGCCAAGAACAGTCGTCCACCAGGGACCTGCCCCTTCTACGAGGAGCTGGAGGCCCTGGTGAGGGCTCGGACAGCCATCAGAAGAACCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005886-'14-10,'14-9,15-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.294
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138371=Myb_DNA-bind_4=WD(100=37.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCCCCAAGTGTTCCAAA
R:
TCACTGTCCACGCTACCATCT
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]