MmuEX6096232 @ mm10
Exon Skipping
Gene
ENSMUSG00000061894 | Zscan20
Description
zinc finger and SCAN domains 20 [Source:MGI Symbol;Acc:MGI:2679268]
Coordinates
chr4:128589452-128591892:-
Coord C1 exon
chr4:128591816-128591892
Coord A exon
chr4:128591473-128591557
Coord C2 exon
chr4:128589452-128590141
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTGTATGTGTCATAGGAA
3' ss Score
8.43
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTGTCCTCACACCCCAAGCCCCAACTGTTCCAAAGATGGCGAGCATTGGAGATTGGGAGGTGGCAGGCAAGTCCCAG
Seq A exon
GAAACCCCGAGCCCCAGTAGACAAGCCAAGAAGGAGCCCTGCCAGGACCCCGCAGGAGGTGATCGTGGGGACAGTGCGTGCCTGG
Seq C2 exon
GAGTTCCAGCTTCAAAGCCAAGTGCCACCTCCCAGCAAGAGCAAGGACCGGAGATTTGGGGTCTGAGCCTTATAAATTCTGGGAATGGGAGTGCTGCAGACGATAGCCTGGACAGTGCGCAAGACAAGCCAGTGCAGGCAGTGGCCCAGGCAGACTCAAGGGCCTGGGGAGAGCCGTGCCAATGGGGTGCGGAGGACATGAAGGTGTCAGGTGTTCACTGGGGCTATGAGGAAACCAAGACTTTCCTGGCCATCTTAAGTGAGTCTCCTTTCTCTGAAAAGCTCCAGACCTGTCACCAGAACCGCCAGGTATACCGGGCTATCGCAGAGCGACTGAGGGCACGGGGCTTCTTGCGGACTCTGGAGCAGTGTCGCTACAGGGTCAAAAACCTTCTCCGGAACTACCGGAAAGCCAAGAACAGCCATCCGCCAGGGACCTGCCCCTTCTATGAGGAGCTGGAGGCCCTTGTGAGGGCTCGGACAGCCATCAGAAGAACCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061894-'12-10,'12-8,13-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138371=Myb_DNA-bind_4=PD(70.1=44.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCCCCAACTGTTCCAAA
R:
TATCGTCTGCAGCACTCCCAT
Band lengths:
169-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types