BtaEX6019893 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011336 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr5:9851916-9866992:+
Coord C1 exon
chr5:9851916-9852078
Coord A exon
chr5:9865987-9866094
Coord C2 exon
chr5:9866854-9866992
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTCTTCACTCGAAAGGAT
3' ss Score
5.2
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
TTCACATCTGCCCTGAGGGAAAACAGTATTTCGACTGTAGGTTTCCTGACCCTCAATTACCAGCTGGTGGTATAAACTGTGAAACGACATGTGCAAATTTGGCTATGAACTTCACTTGCGCCCCATCGTCACCCTGCATAAGTGGCTGTGTTTGTGCTCCAGG
Seq A exon
GATGGCAGAGCACAAAGGAAAGTGTTACATTCCTGAAAGCTGTCCCTGTATTTGGAAAGATTGGGAGTACCTCTCAGGAGAAGTGATTGCTACACCATGCTATACCTG
Seq C2 exon
TGTTTGTCGACGAGGAATGTTCAATTGCACATATTATCCATGCCCAGCAGTATGCACAATATATGGGGACCGGCATTATCATTCTTTTGATGGACTGGAATATGATTATATCAGTGATTGCCAGGTATTTTTGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011336-'24-25,'24-24,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(77.3=92.7)
A:
PF0182612=TIL=PD(21.2=37.8)
C2:
PF0009420=VWD=PU(18.9=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGACCCTCAATTACCAGCT
R:
TCAAAAATACCTGGCAATCACTGA
Band lengths:
254-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]