GgaEX6001418 @ galGal4
Exon Skipping
Gene
ENSGALG00000010342 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr1:39722800-39725666:+
Coord C1 exon
chr1:39722800-39722962
Coord A exon
chr1:39724224-39724331
Coord C2 exon
chr1:39725528-39725666
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTAATTCTTTTATTTTAAAGGAT
3' ss Score
7.58
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TTCACATATGCCCTGAAGGAAAAATCTACTATGACTGCAGATCTCCTGTGCCTGGATTACCAGCAGCAGGTGTGAATTGTGGGATCTCCTGTGCAAACCTTGCCATGAACTTCTCCTGTGTCCCCTCACCACCCTGTGCCAGTGGCTGCATTTGCCCCCCTGG
Seq A exon
GATGGCTGAGCATAGAGGGAAGTGTTATATTCCTGACAGCTGTCCATGCACCTGGAAAGATAGGGAATTTCTATCAGGAGAAGTGATATCTACGCCTTGTTATACCTG
Seq C2 exon
TGTTTGTCGGAGAGGGGTATTCAATTGCACTAGTTACCCCTGTCCTGCTGTATGCACGATTTATGGAGATCGACATTATTATACCTTTGATGGCCTGGAGTATGATTACGCCAGTGACTGCCAAGCTTACCTGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010342-'24-25,'24-24,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(77.3=92.7)
A:
PF0182612=TIL=PD(21.2=37.8)
C2:
PF0009420=VWD=PU(19.0=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTGTGCCTGGATTACCA
R:
GGTAAGCTTGGCAGTCACTGG
Band lengths:
253-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]