DreEX6063925 @ danRer10
Exon Skipping
Gene
ENSDARG00000088750 | otogl
Description
otogelin-like [Source:ZFIN;Acc:ZDB-GENE-050419-93]
Coordinates
chr18:6060057-6061641:+
Coord C1 exon
chr18:6060057-6060231
Coord A exon
chr18:6060338-6060445
Coord C2 exon
chr18:6061503-6061641
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTTAATTGGTGCAGGCT
3' ss Score
6.18
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
Exon sequences
Seq C1 exon
AGCCCGAGCGAGGAGACTGTCCCAATGGCAAAGTGTACTACAGCTGTCGGGGTCAGAGCGGCCGCGGACCCTCAGGTGTCGGTTTGGCCTGTGAACTGACCTGTCGAAACCTGATGCTGAACCTGACCTGCCCTCCCATGACCCCGTGTGTACCAGGATGTGGATGTCCAGCCGG
Seq A exon
GCTAGTGGTTCATAATGGAGAGTGTTATTACCCAGAGAACTGCCCCTGTGCGTGGCTCGGTCTAGAGTATCTCCCTGGGGAGACAGTGGACACGCCGTGCTACCGATG
Seq C2 exon
TGTTTGTCATCGTGGATTCTTCAACTGCACATACTACCCATGTCCAGCAGTGTGTACCGTATACAGTGACCGTCATTACCACACATTTGATGGCCTGGAGTATGATTATGTGAGCGACTGCCAGGTCAACCTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088750-'21-21,'21-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(77.6=88.1)
A:
PF0182612=TIL=PD(20.9=37.8)
C2:
PF0009420=VWD=PU(19.0=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTACTACAGCTGTCGGGG
R:
TCCAGGCCATCAAATGTGTGG
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]