MmuEX6051166 @ mm9
Exon Skipping
Gene
ENSMUSG00000091455 | Gm6924
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107290323-107294186:-
Coord C1 exon
chr10:107294024-107294186
Coord A exon
chr10:107291302-107291409
Coord C2 exon
chr10:107290323-107290461
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTTCATTTGGAAGAAT
3' ss Score
3.06
5' ss Seq
CTGGTAACA
5' ss Score
4.6
Exon sequences
Seq C1 exon
TCCACGCCTGCCCAGAAGGGAAGGAATATTTTGACTGCAGGTTTCCTGACCCTGCGTTACCAGCTGGTGGTATAAACTGCGAGACGACGTGCGCAAACCTGGCCATGAACTTCACCTGTGCTCCATCCTCGCCTTGCATCAGTGGCTGCGTTTGTGCTGCAGG
Seq A exon
AATGGCAGAACACAAAGGAAAATGCTATGTTCCCGAAAGCTGTCCCTGCATCTGGAAGGACTGGGAGTACAGCTCAGGGGAGGTCATCTCTACACCGTGTTACACCTG
Seq C2 exon
TGTTTGTCGGCGGGGGATGTTCAATTGCACATATTATCCATGTCCTGCAGTATGCACAGTATATGGGGACCGGCATTATCACTCCTTTGATGGATTGGAATATGACTATATCAGCGATTGCCAAGTGTTTTTGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(77.3=92.7)
A:
PF0182612=TIL=PD(21.2=37.8)
C2:
PF0009420=VWD=PU(18.9=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCTGACCCTGCGTTACC
R:
AAAACACTTGGCAATCGCTGA
Band lengths:
254-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: