HsaEX7007330 @ hg38
Exon Skipping
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80271648-80279166:+
Coord C1 exon
chr12:80271648-80271810
Coord A exon
chr12:80278168-80278275
Coord C2 exon
chr12:80279028-80279166
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTATTCTTCATTTGGAAGAAT
3' ss Score
3.13
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
TTCACATCTGCCCAGAGGGAAAAGAGTATTTCGACTGCAGGTTTCCTGACCCTGAATTACCAGCTGGTGGTGTTAATTGTGAGACTACATGTGCAAACCTAGCCATGAACTTCACCTGCACCCCATCCTCACCCTGTATAAGTGGCTGTGTTTGTGCTCCAGG
Seq A exon
AATGGCAGAGCACAGAGGAAAGTGTTATGTTCCTGAAAGCTGCCCATGTATTTGGAAAGATTGGGAGTATCTCTCAGGAGAAGTGATTGCTACACCGTGTTACACCTG
Seq C2 exon
CGTTTGTCGACGAGGAATGTTCAATTGCACATATTATCCATGCCCAGCAGTGTGCACAATATACGGGGACCGACATTATTATTCTTTTGATGGACTAGAATATGACTATATCAGTGATTGCCAGGTGTTTTTGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-'30-36,'30-35,32-36=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(77.3=92.7)
A:
PF0182612=TIL=PD(21.2=37.8)
C2:
PF0009420=VWD=PU(18.9=59.6)
Main Skipping Isoform:
ENST00000458043fB21758
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGACCCTGAATTACCAGCT
R:
AAAACACCTGGCAATCACTGA
Band lengths:
251-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains