RnoEX0062663 @ rn6
Exon Skipping
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51838486-51842244:+
Coord C1 exon
chr7:51838486-51838648
Coord A exon
chr7:51841161-51841268
Coord C2 exon
chr7:51842106-51842244
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTTTCATTTGGAAGGAT
3' ss Score
5.31
5' ss Seq
CTGGTAACA
5' ss Score
4.6
Exon sequences
Seq C1 exon
TCCACGCCTGCCCAGAAGGGAAGGAATATTTTGACTGCAGGTTTCCTGACCCTGAATTACCAGCTGGTGGTATAAATTGCGAGACCACGTGTGCAAACATGGCCATGAACTTCACCTGTGCTCCATCCTCGCCTTGCATCAGTGGCTGCGTTTGTGCTGCAGG
Seq A exon
GATGGCTGAGCACAAAGGAAAATGCTATGTTCCTGAAAGCTGTCCTTGCATCTGGAAAGACTGGGAATATGGCTCAGGGGAAGTCATCACTACACCATGTTACACCTG
Seq C2 exon
TGTTTGTCGGCGAGGGATGTTCAACTGCACGTATTATCCGTGTCCCGCAGTGTGCACCGTCTATGGGGACCGGCATTACCATTCCTTTGATGGCTTGGAATATGACTATATCAGCGACTGCCAGGTGTTCTTGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316-'28-32,'28-31,29-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(77.3=92.7)
A:
PF0182612=TIL=PD(21.2=37.8)
C2:
PF0009420=VWD=PU(18.9=59.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGACCCTGAATTACCAGCT
R:
ATCAAGAACACCTGGCAGTCG
Band lengths:
255-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]