BtaEX6020630 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017950 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chr5:28511410-28515872:-
Coord C1 exon
chr5:28515737-28515872
Coord A exon
chr5:28514178-28514338
Coord C2 exon
chr5:28511410-28511627
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTGTCATGCTTTCAGGTG
3' ss Score
10.54
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACACACCATCTCAGCGTGTTCAGTTCATTCTTGGCACTGAGGAGGATGAAGAACATGTGCCTCATGACCTCTTCACAGAGCTGGATGAGATCTGTCTGAAAGAGGGAGAAGATGCTGAGTGGAAGGAGACAGCCAG
Seq A exon
GTGGCTGAAGTTTGAAGAAGATGTCGAGGATGGGGGAGAACGATGGAGCAAGCCTTATGTGGCAACCCTTTCACTGCACAGTCTCTTTGAGTTAAGAAGCTGTCTTATTAATGGGACGGTCCTTCTGGATATGCGTGCAAATAGCATAGAAGAAATCTCAG
Seq C2 exon
ACCTGATCCTGGACCAGCAGGAGCTGTTCAGTGACCTGAATGACAGCATGAGGGTTAAAGTCCGGGAAGCCCTTCTCAAAAAGCATCATCATCAGAATGAAAAGAAGAGAAATAACCTCATCCCCATTGTTCGCTCCTTTGCTGAGGTTGGCAAGAAGCAGTCTGATCCACATTCAATGGATAAACATGGTAAGATTATTAGGAGTAACTGCTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017950-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.000 C2=0.151
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(12.8=85.5)
C2:
PF075658=Band_3_cyto=FE(19.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGGCACTGAGGAGGATGA
R:
GCGAACAATGGGGATGAGGTT
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]